PolyA_SVM
Analysis and Prediction of mRNA Polyadenylation Sites by Support Vector Machine
Version: 2.2
Input Sequence (FASTA format, 120 bases - 24 Kb)
Insert your sequence here:
Or, load a file from disk:
Parameters
Running mode:
Predict poly(A) sites,
Analyze cis elements,
Do both
Select a region:
From=
,
To=
(default: whole sequence)
For a single location:
(default: scan the whole sequence)
Sequence strand:
plus strand
minus strand
PolyA_SVM score cutoff:
(default: 6)
High Probablity Region (HPR) size:
(default: 32 nt)
Select a training species:
Homo sapiens (human)
Gallus gallus (chicken)
Danio rerio (zebrafish)
Takifugu rubripes (fugu fish)
Drosophila melanogaster (fly)
Anopheles gambiae (mosquito)
Caenorhabditis elegans (worm)
Please contact Bin Tian (btian@umdnj.edu) for questions/comments/suggestions.
Last updated: 9/16/2008
Tian Lab, UMDNJ-New Jersey Medical School
